PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0132s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 400aa    MW: 41530.2 Da    PI: 5.3926
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0132s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.4e-14131212186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + aL++a   +  ++ rg+l++++W++v +++ +rg+  ++s +qC++k++nl+kr+k ++e          s +p+f+ l+
  Mapoly0132s0016.1.p 131 EWSEAAITALLDAFGARYIASHRGNLRGKDWADVTRAVNARGVtgNKSVEQCRNKIDNLKKRFKLEREKGTP------SAWPWFRTLD 212
                          5*****************************************98889*****************99987775......5799999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-21130214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MRKRRVGGEE EDGEEEEEEG GGGEGEGEGE VGVEVAGAEG GGGAGLGVGA LDEVDGGGVA  60
PRGVEDDGMM AMSQEEEIVG GGAVAAGVGV GVVVASAGGG GVAPGPPSAG AGGNNINSNN  120
SSKRARSDAA EWSEAAITAL LDAFGARYIA SHRGNLRGKD WADVTRAVNA RGVTGNKSVE  180
QCRNKIDNLK KRFKLEREKG TPSAWPWFRT LDAIVGRAPK RAGIPGGIDG GHRSDPDIKL  240
SLPTDVLLPP PQPPPPPHPP PMLALQAVAP VPDDSDPDNV AETPYSSQRD SHTDFPTFKG  300
TGKDVMSEMT NPNPKANSNA VPNGPGKLNR KKRKNVCQAG KDVAASIASF AEVFAKIEFA  360
KMELFKDMEL RRLEMQYKLA KLAHTSKKGR TNSVSSNSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-27Trihelix family protein